Motif estiamtion #12
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Motif estiamtion #12
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Merge dev to motif_estimation to bring branch up to date
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3c4f733:
Additionally, the documentation was updated. |
HendrikSchultheis
requested changes
Dec 19, 2018
bin/get_best_motif.py
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| parser.add_argument("output", help="Output file") | ||
| parser.add_argument("num", help="Number of motifs parsed from file") | ||
| args = parser.parse_args() | ||
| return args | ||
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| # write lines of file till certain line (MOTIF + [num]) | ||
| ''' | ||
| The script has to functions: |
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Fixed: 8389226
bin/get_best_motif.py
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| The script has to functions: | ||
| 1. Writing lines of file till certain line (MOTIF + [num]) | ||
| 2. Converting GLAM2 output to minimal meme-format | ||
| @params meme STING Path to 'meme' file generated from Meme suite |
There was a problem hiding this comment.
Fixed: 8389226
bin/get_best_motif.py
Outdated
| 1. Writing lines of file till certain line (MOTIF + [num]) | ||
| 2. Converting GLAM2 output to minimal meme-format | ||
| @params meme STING Path to 'meme' file generated from Meme suite | ||
| @parmas output STING Output file |
There was a problem hiding this comment.
Fixed: 8389226
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Script can now take BED-files with and without header as input. See: 2fca158 |
HendrikSchultheis
requested changes
Dec 20, 2018
bin/bed_to_fasta.R
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| opt <- parse_args(opt_parser) | ||
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| #' Splitting BED-files depending on their cluster. | ||
| #' The Sequences of each cluster are writen as an FASTA-file. |
HendrikSchultheis
approved these changes
Dec 20, 2018
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fixes #11 |
This was referenced Dec 20, 2018
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Fix for issue '#11'.
Improved documentation for the script 'bed_to_fasta.R'.